Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12667213 chr7:32771990 A/G 0.000103 495 31.43 32.9 31.97 KM Plot
THCA rs12669131 chr7:32788746 T/G 9.65E-5 501 31.45 31.67 31.97 KM Plot
THCA rs12669162 chr7:32797921 G/C 9.65E-5 500 31.45 31.67 32.1 KM Plot
THCA rs12670008 chr7:32794259 G/A 9.91E-5 500 31.47 31.57 32.1 KM Plot
THCA rs12672074 chr7:32802679 C/G 9.96E-5 500 31.43 31.57 32.1 KM Plot
THCA rs12672099 chr7:32813419 G/A 9.2E-5 500 31.45 31.67 32.1 KM Plot
THCA rs12673277 chr7:32795618 T/C 9.88E-5 500 31.47 31.57 32.1 KM Plot
THCA rs12678187 chr8:58113766 G/A 1.78E-15 490 31.27 37.97 32.1 KM Plot
THCA rs12678634 chr8:60157319 G/A 0.000111 497 31.73 30.13 20.5 KM Plot
THCA rs12693239 chr2:181339971 A/G 0.000151 503 32.87 31.3 31.43 KM Plot
THCA rs12701245 chr7:32798509 A/G 9.65E-5 500 31.45 31.67 32.1 KM Plot
THCA rs12724858 chr1:152915631 C/T 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs12737395 chr1:152923046 G/A 0.000139 499 31.42 34.43 37.7 KM Plot
THCA rs12744709 chr1:153002303 G/A 0.00014 502 31.6 31.6 37.7 KM Plot
THCA rs12750261 chr1:152913068 G/A 0.000138 500 31.47 34.4 37.7 KM Plot